Peperomia flowers are pretty easy to remove, and there are a few ways you can do it. If you're feeling handy with sharp, clean scissors, go for it! Or, if you'd rather not cut yourself, pruning shears might be a better option. The first thing you'll want to do is find a thin, inconspicuous flower stalk. Then, cut it right at the base of the plant. Once you've done that, throw the stalks in the compost bin.